Experience
Allen Institute for Cell Science
Software Engineer · 2023 — Present · Seattle, WA
Building computational methods for 3D cell imaging and microscopy. Developing knowledge graphs, foundation models, and AI-powered tools for the Cell Science division.
Simon Fraser University
M.Sc. Computer Science · 2021 — 2023 · Burnaby, BC
Medical Image Analysis group under Prof. Ghassan Hamarneh. Thesis: structural analysis of endoplasmic reticulum dynamics using network-based methods. NanoscopyAI collaboration with UBC.
EMBL Heidelberg
Visiting Scholar · 2020 · Heidelberg, Germany
Anna Kreshuk’s group. Automated localization of kinetochores in cell division microscopy data.
CNRS CINAM
Research Engineer (CDD) · 2019 — 2020 · Marseille, France
Developed automated pipeline for detection and classification of red blood cells from blood flow recordings. Prototype for ICOVELL spin-off.
European Centre for Medium-Range Weather Forecasts (ECMWF)
ESoWC Fellow · 2020 & 2021 · Remote
Deep learning methods for tropical cyclone detection and tracking in reanalysis data.
CERN-HSF
Google Summer of Code Student · 2018 · Remote
Built a package manager for the ROOT data analysis framework.
Education
M.Sc. Computer Science — Simon Fraser University, 2023
B.E. Computer Engineering — Pune Institute of Computer Technology, University of Pune, 2019
Selected Publications
See Publications for the full list.
Skills
ML/DL: PyTorch, MONAI, PyG, JAX, scikit-learn, self-supervised learning, graph neural networks, equivariant networks, diffusion models
Computer Vision: 3D microscopy, segmentation, instance detection, super-resolution, medical image analysis
Infrastructure: Neo4j, Docker, distributed training (multi-GPU), MCP tools, CI/CD
Languages: Python, TypeScript, C++, Rust (learning)
Domains: Cell biology, astrophysics, climate science, medical imaging
Download PDF version: CV.pdf (coming soon)